Nencki Institute - Laboratory of Bioinformatics
BIOINFO LAB


MD PhD Michał Dąbrowski

Head of the laboratory.
Mail: m.dabrowski@nencki.gov.pl
  • Dabrowski M, Dojer N, Krystkowiak I, Kaminska B, Wilczynski B. 2015, Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data. BMC Bioinformatics. >>
  • Krystkowiak I., Lenart J., Debski K., Kuterba P., Petas M., Kaminska B., Dabrowski M. 2013, Nencki Genomics Database - Ensembl funcgen enhanced with intersections, user data, and genome-wide TFBS motifs. Database >>
  • Dabrowski M, Dojer N, Zawadzka M, Mieczkowski J, Kaminska B. 2010, Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems. BMC Syst Biol. >>


    MSc Konrad J. Dębski

    Biologist and bioinformatics riding on motorbike. R-programmer.

    WWW: Home page
    Mail: k.debski@nencki.gov.pl
    KD
  • Konrad J. Dębski, Asla Pitkanen, Noora Puhakka, Anna M. Bot, Ishant Khurana, KN Harikrishnan, Mark Ziemann, Antony Kaspi, Assam El-Osta, Katarzyna Lukasiuk, Katja Kobow. 2016, Etiology matters – Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy. Scientific Reports >>
  • Diana Miszczuk, Konrad J. Dębski, Heikki Tanila, Katarzyna Lukasiuk, Asla Pitkänen. 2015, Traumatic Brain Injury Increases the Expression of Nos1, Aβ Clearance, and Epileptogenesis in APP/PS1 Mouse Model of Alzheimer’s Disease. Molecular Neurobiology >>
  • Anna Maria Bot, Konrad Józef Dębski, Katarzyna Lukasiuk. 2013, Alterations in miRNA Levels in the Dentate Gyrus in Epileptic Rats. PLoS ONE >>
  • Krystkowiak I., Lenart J., Debski K., Kuterba P., Petas M., Kaminska B., Dabrowski M. 2013, Nencki Genomics Database - Ensembl funcgen enhanced with intersections, user data, and genome-wide TFBS motifs. Database >>


    ACH MSc Agata Charzyńska

    Mathematician

    Mail: a.charzynska@nencki.gov.pl
  • Weronika Wronowska, Agata Charzyńska, Karol Nienałtowski, Anna Gambin. 2015, Computational modeling of sphingolipid metabolism. BMC Systems Biology 08/2015; 9(1):47. DOI:10.1186/s12918-015-0176-9 >>
  • Tomasz Jetka, Agata Charzynska, Anna Gambin, Michael P H Stumpf, Michal Komorowski. 2013, StochDecomp-Matlab package for noise decomposition in stochastic biochemical systems. Bioinformatics 11/2013; 30(1). DOI:10.1093/bioinformatics/btt631 >>

    MSc Aleksandra Cabaj

    Biotechnologist/bioinformatician currently exploring the world of chromatin conformation capture and DNase-seq experiments.

    Mail: al.cabaj@nencki.gov.pl
    OC


    SM Shamba Mondal

    An engineering degree with Biotechnology major in the bachelors (4 years Bachelor of Technology), and a masters degree in an interdisciplinary Bioinformatics program (2 years Master of Technology) consists my formal educational background. Enrolled in the PhD program of Nencki Institute of Experimental Biology (Instytut Biologii Doświadczalnej im. M. Nenckiego PAN), under the supervision of Prof Bożena Kamińska-Kaczmarek (Laboratory of Molecular Neurobiology) and Dr Michał Dąbrowski (Laboratory of Bioinformatics), my research activity mainly focuses on transcriptional regulation, genetic and epigenetic control of glioma systems in rats, mice and humans. A computational biologist by profession, with extreme interest in the integrative picture of life, both within and without.

    Mail: s.mondal@nencki.gov.pl

  • Wei Y, Mondal SS, Mouawad R, Wilczyński B, Henry RW, Arnosti DN. 2015 Genome-Wide Analysis of Drosophila Rbf2 Protein Highlights Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis. G3 (Bethesda) >>

  • CopyRight: Konrad J. Dębski 2015 - 2017